This documentation is for AMR++ version 2.0. Click here for the latest docs.
To run AmrPlusPlus, you will need the following libraries and tools installed on your server or local machine.
- Visit this website for further information: https://singularity.lbl.gov/docs-installation
- Java 7+ (Required)
- Nextflow (Required)
If you choose not to install Singularity, you will need to download each of the required dependencies and add the executable paths to your .bashrc file to run the pipeline. A list of these dependencies can be found in the Dependencies section of this document.